CAFRI-Rice CRISPR Applicable Functional Redundancy Inspector

CAFRI-Rice Predict functional redundancy with phylogenetic heatmap for rice functional genomics

phylogenetic heatmap

In the era of genome editing, one of urgently required technology in plant biology is finding out proper target which doesn't have functional redundancy. CAFRI-Rice is a simple web-based tool that help user to find proper target in genome editing with CRISPR system. It visualizes functional redundancy of quried gene as phylogenetic heatmap and pearson correlation coefficient score. Possible redundant genes are highlighted with yellow, orange, and orange-red background.

Input examples
No family One Two
MSU7 LOC_Os01g01120 LOC_Os09g23820 LOC_Os01g01050

Select Database

Color scale log2 expression value (Anatomy and Anatomy_expand DB)

Color scale log2 foldchange value (Abiotic, Biotic, Hormone, and Nutrient DB )

PCC highlight information

Panel information Click to see more information